BlastAlign Web Interface - Version 1.0

BlastAlign: a program that uses blast to align nucleotide sequences that have large indels (INsertions/DELetions) or are otherwise difficult to align.

Paste here your sequences in  FASTA format.

Go to the simple interface

Enter the options:

Maximum proportion of gaps allowed in any one sequence

Name of reference sequence (if required):

Names of comma-separated sequences to be excluded from this analysis (Optional):

Number of sequences to use in initial search (default is all):

Retain original names in output?

BlastAlign Developed by Robert Belshaw and Aris Katzourakis
Web-interface developed by Aris Katzourakis, Robert Belshaw and Tulio de Oliveira.

Page last updated by Tulio de Oliveira.