Human immunodeficiency virus 1 (HIV-1) Blast Search

Complete Genbank search, numbering positioning and fast subtyping with HIV-1 genotype reference dataset.

Enter sequence below in FASTA format

Or load it from disk

Choose the Option Below:

Search the Complete HIV Genbank database

Search the HIV Genotype Reference database

Search the HXB2 HIV reference Sequence

back to the BioAfrica Blast server webpage

Developed by:

Tulio de Oliveira, Chris Rajah*, Chris Seebregts* and Sharon Cassol at the Molecular Virology and Bioinformatics Unit, Africa Centre at Nelson R Mandela School of Medicine and the Research Information Systems Division, South African Medical Research Council (MRC)*.
Choose program to use and database to search:


The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Other advanced options:     

Graphical Overview    Alignment view
Descriptions    Alignments

Page last updated 25 July 2008 by Tulio de Oliveira.