Recent and Selected Publications

Those are some of my favorities recent publications. Open access publications (full manuscript) are marked with the pdf logo and can be downloaded in this website.

Open access pdf
Publication title, journal and authors



The HIV-1 Subtype C Epidemic in South America is Linked to the United Kingdom.
de Oliveira T, Pillay D, Gifford RJ; for the UK Collaborative Group on HIV Drug Resistance. (2010) PLoS One, 19;5(2):e9311.


Evolution and Molecular Epidemiology of HIV-1 Subtype C in Zimbabwe. 
Dalai SC, de Oliviera T, Harkins GH, Kassaye SG, Lint J, Manasa J, Johnston E, Katzenstein D. (2009) AIDS, 23(18):2523-32.


A Standardized Framework for Accurate, High-throughput Genotyping of Recombinant and Non-recombinant Viral Sequences .
Alcantara LCJ, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvao-Castro B, Vandamme AM & de Oliveira T. (2009) Nucleic Acids Research, 1-9, doi: 10.1093/nar/gkp455


The RNA Virus Database.
Belshaw R, de Oliveira T, Markowitz S, Rambaut A. (2009) Nucleic Acids Research, 37 (Database issue):D431-5.

High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania. 
Salemi M, de Oliveira T, Ciccozzi M, Rezza G, Goodenow MM. (2008) PLoS ONE, 2;3(1):e1390.
Phylogenetic Surveillance of Viral Genetic Diversity and the Evolving Molecular Epidemiology of HIV-1.  
de Oliveira T/Gifford RJ,  Rambaut A, Pybus OG, Dunn D, Vandamme AM, Kellam P, Pillay D. (2007) Journal of Virology, 81(23):13050-6.

Libya should stop denying scientific evidence on HIV.
Colizzi V, de Oliveira T, Roberts RJ. (2007) Nature, 448(7157):992.
Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak. 
de Oliveira T, Pybus OG, Rambaut A, Salemi M, Cassol S, Ciccozzi M, Rezza G, Gattinara GC, D’Arrigo R, Amicosante M, Perrin L, Colizzi V, Perno CF. (2006) Nature  444(7121):836-7.
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 Tracing the origin of Brazilian HTLV-1 as determined by analysis of host and viral genes. 
Alcantara LC, de Oliveira T, Gordon M, Pybus O, Mascarenhas RE, Seixas MO, Goncalves M, Hlela C, Cassol S, Galvao-Castro B. (2006) AIDS, 20(5):780-782.
Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS.
Salemi M, Lamers SL, Yu S, de Oliveira T, Fitch WM, McGrath M. (2005) Journal of Virology 79(17):11343-11352.

Scourge of a Continent: The BioAfrica website
de Oliveira T, Cassol S (edited by M. Leslie) (2005) Science 310, 1877.
An automated genotyping system for analysis of HIV-1 and other microbial sequences. 
de Oliveira T, K. Deforche, S. Cassol, M. Salminen, R. Camacho, D. Pavareskevis, C. Seebregts, J. Snoeck, A.M. VanDamme. (2005) Bioinformatics 21: 3797-3800.



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