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REGA HIV-1 & 2 Automated Subtyping Tool (Version 2.0)

This tool is designed to use phylogenetic methods in order to identify the subtype of a specific sequence.  The sequence is analysed for recombination using bootscanning methods.

Note for batch analysis: The REGA subtype tool accepts up to 1000 sequences at a time. 

Enter here your input data as FASTA format.

Choose a mirror to subtype your sequences or choose another virus to genotype.

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Developed by: Tulio de Oliveira, Koen Deforche, Sharon Cassol, Andrew Rambaut and Anne-Mieke Vandamme.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa,  the Evolutionary Biology Group at University of Oxford, UK., the HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa, and the REGA Institute at the Katholieke Universiteit Leuven, Belgium.

Funded by the Marie Curie Fellowship, Royal Society and Wellcome Trus, UK.

In order to help in the responce to the Zika worldwide emergency, we have produced a sutyping tool to identify Dengue, Zika and Chikungunya viruses species and genotypes.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.