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LASP HTLV-1 Automated Subtyping Tool (Version 1.0)

This tool uses phylogenetic methods to identify the subtype of query sequences.

Please note: The HTLV-1 subtyping is based only in the LTR region of the genome.

Note for batch analysis: The LASP HTLV-1 subtype tool accepts up to 1000 sequences at a time.

Enter here your input data as FASTA format.

Choose a mirror to subtype your sequences  or choose another virus to genotype.




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 HTLV Tutorials
 HTLV Decision Trees
 HTLV Subtyping Process
 HTLV Example Sequences
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Developed by: Luiz Carlos J Alcantara,  Sonia Van Dooren, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Tulio de Oliveira.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa,  the REGA Institute at the Katholieke Universiteit Leuven, Belgium and the Laboratorio Avancado de Saude Publica (LASP) CPqGM/FIOCRUZ, Brazil.

Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program, PN-DST/AIDS (Ministry of Health) and FAPESB, Brazil.

For HTLV-1 subtyping questions please contact Dr Luiz Alcantara,
Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.